PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000215590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 350aa    MW: 39623.8 Da    PI: 9.3319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000215590genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.51.7e-101101422657
                    EE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
           WRKY  26 rCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                    rC++  gCp++k+ver+ +dpk++++tYe eH+
  MDP0000215590 110 RCSTViGCPARKHVERALDDPKMLVVTYEAEHH 142
                    9*9999**************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.6E-498145IPR003657WRKY domain
SuperFamilySSF1182902.48E-8104144IPR003657WRKY domain
PROSITE profilePS5081115.273105146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-9109143IPR003657WRKY domain
PfamPF031062.9E-7110142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MQCTKTSLNN LKNLTKVFLR LTYTRFDGKS RREVRPRQSS SFHYVDFGFP KVKSNGSPWG  60
REEESWWLPC QRISVPPLCV KEEAEREIEE RECGSVVFRW WQGLPEWRMR CSTVIGCPAR  120
KHVERALDDP KMLVVTYEAE HHVGGPTGHQ KPIKILVKCP HKTLCYRDFE LRGLQTGLKK  180
KNIMLATYSA ACSRLVILPL TIEQALAGHY TALVPLGIEE GNIWQCCLAA RFGSRWRFFV  240
THWASGGRKN NNDQVLIEXV ENHMPQVIVI DEXGTKLXAL AAXKXAXRGI QLVATAHGVT  300
IENLIMNPSX EMXVGGIQSV TLGDEEASRQ GVQKTVQERK GPATLVVGWR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-12WRKY DNA-binding protein 11